ConCisE Scanner


Conserved Cis-Element Scanner: Genome-wide ortholog conserved Cis-element module search

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c) With respect to : First Exon Last Exon Gene

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Select binding sites for search against genes :

V$AARF - AARE binding factors V$AHRR - AHR-arnt heterodimers and AHR-related factors
V$AP1F - AP1, Activating protein 1 V$AP1R - MAF and AP1 related factors
V$AP2F - Activator Protein 2 V$AP4R - AP4 and Related proteins
V$AREB - Atp1a1 regulatory element binding V$ARP1 - Apolipoprotein aI and cIII gene Repressor Protein
V$BARB - BARbiturate-Inducible El. box from Pro+eukaryot. genes V$BCL6 - POZ domain zinc finger expressed in B-Cells
V$BEL1 - Bel-1 similar region V$BNCF - Basonuclein rDNA transcription factor (PolI)
V$BRAC - Brachyury gene, mesoderm developmental factor V$BRNF - Brn POU domain factors
V$CABL - C-abl DNA binding sites V$CART - Cart-1 (cartilage homeoprotein 1)
V$CDEF - Cell cycle regulators: Cell cycle dependent element V$CDXF - Vertebrate caudal related homeodomain protein
V$CEBP - Ccaat/Enhancer Binding Protein V$CHOP - CHOP binding protein
V$CHRF - Cell cycle regulators: Cell cycle homology element V$CIZF - CAS interating zinc finger protein
V$CLOX - CLOX and CLOX homology (CDP) factors V$CMYB - C-myb, cellular transcriptional activator
V$COMP - Factors which cooperate with myogenic proteins V$COUP - Repr. of RXR-mediated activ. & retinoic acid responses
V$CP2F - CP2-erythrocyte Factor related to drosophila Elf1 V$CREB - Camp-Responsive Element Binding proteins
V$DEAF - Homolog to deformed epidermal autoregulatory factor-1 from D. melanogaster V$E2FF - E2F-myc activator/cell cycle regulator
V$E2TF - papillioma virus E2 Transcriptional activator V$E4FF - Ubiquitous GLI - Krueppel like zinc finger involved in cell cycle regulation
V$EBOR - E-box related factors V$EBOX - E-box binding factors
V$ECAT - Enhancer CCAAT binding factors V$EGRF - EGR/nerve growth Factor Induced protein C & rel. fact.
V$EKLF - Basic and erythroid Krueppel like factors V$EREF - Estrogen Response Elements
V$ETSF - Human and murine ETS1 factors V$EVI1 - EVI1-myleoid transforming protein
V$FAST - FAST-1 SMAD interacting proteins V$FKHD - Fork Head Domain factors
V$GABF - GA-boxes V$GATA - GATA binding factors
V$GFI1 - Growth Factor Independence-transcriptional repressor V$GKLF - Gut-enriched Krueppel like binding factor
V$GLIF - GLI zinc finger family V$GREF - Glucocorticoid responsive and related elements
V$HAML - Human acute myelogenous leukemia factors V$HAND - bHLH transcription factor dimer of HAND2 and E12
V$HEAT - Heat shock factors V$HEN1 - E-box binding factor without transcript. activation
V$HESF - Vertebrate homologues of enhancer of split complex V$HIFF - Hypoxia inducible factor, bHLH / PAS protein family
V$HMTB - Human muscle-specific Mt binding site V$HNF1 - Hepatic Nuclear Factor 1
V$HNF4 - Hepatic Nuclear Factor 4 V$HNF6 - Onecut Homeodomain factor HNF6
V$HOMS - Homeodomain subfamily S8 V$HOXF - Factors with moderate activity to homeo domain consensus sequence
V$HOXT - HOXA9 - MEIS1 - PBX ternary complex V$IKRS - Ikaros zinc finger family
V$IRFF - Interferon Regulatory Factors V$LEFF - LEF1/TCF
V$LHXF - Lim homeodomain factors V$LTUP - Lentiviral Tata UPstream element
V$MAZF - Myc associated zinc fingers V$MEF2 - MEF2-myocyte-specific enhancer-binding factor
V$MEF3 - MEF3 BINDING SITES V$MEIS - Homeodomain factor aberrantly expressed in myeloid leukemia
V$MINI - Muscle INItiator V$MITF - Microphthalmia transcription factor
V$MOKF - Mouse Krueppel like factor V$MTF1 - Metal induced transcription factor
V$MYOD - MYOblast Determining factor V$MYOF - MYOgenic Factors
V$MYT1 - MYT1 C2HC zinc finger protein V$MZF1 - Myeloid Zinc Finger 1 factors
V$NEUR - NeuroD, Beta2, HLH domain V$NF1F - Nuclear Factor 1
V$NFAT - Nuclear Factor of Activated T-cells V$NFKB - Nuclear Factor Kappa B/c-rel
V$NKXH - NKX/DLX - homeodomain sites V$NOLF - Neuron-specific-olfactory factor
V$NRLF - Neural retina leucine zipper V$NRSF - Neuron-Restrictive Silencer Factor
V$OAZF - Olfactory associated zinc finger protein V$OCT1 - Octamer binding protein
V$OCTB - OCT6 binding factors_astrocytes + glioblastoma cells V$OCTP - OCT1 binding factor (POU-specific domain)
V$P53F - p53 tumor suppr.-neg. regulat. of the tumor suppr. Rb V$PARF - PAR/bZIP family
V$PAX1 - PAX-1 binding sites V$PAX2 - PAX-2 binding sites
V$PAX3 - PAX-3 binding sites V$PAX4 - Heterogeneous PAX-4 binding sites
V$PAX5 - PAX-5/PAX-9 B-cell-specific activating protein V$PAX6 - PAX-4/PAX-6 paired domain binding sites
V$PAX8 - PAX-2/5/8 binding sites V$PBXC - PBX1 - MEIS1 complexes
V$PBXF - Homeo domain factor PBX-1 V$PCAT - Promoter CCAAT binding factors
V$PDX1 - Pancreatic and intestinal homeodomain transcr. factor V$PERO - PEROxisome proliferator-activated receptor
V$PIT1 - GHF-1 pituitary specific pou domain transcription factor V$PLZF - C2H2 zinc finger protein PLZF
V$PXRF - Pregnane X receptor V$RARF - Nuclear receptor for retinoic acid
V$RBIT - Regulator of B-Cell IgH transcription V$RBPF - RBPJ - kappa
V$RCAT - Retroviral CCAAT binding factors V$REBV - Epstein-Barr virus transcription factor R
V$RORA - v-ERB and rar-related Orphan Receptor Alpha V$RP58 - RP58 (ZFP238) zinc finger protein
V$RREB - Ras-responsive element binding protein V$RXRF - RXR heterodimer binding sites
V$SATB - Special AT-rich sequence binding protein V$SF1F - Vertebrate steroidogenic factor
V$SIXF - Sine oculis (SIX) homeodomain factors V$SMAD - Vertebrate SMAD family of transcription factors
V$SORY - SOx/sRY-sex/testis determinig and related HMG box factors V$SP1F - GC-Box factors_SP1/GC
V$SRFF - Serum response element binding factor V$STAT - Signal transducer and activator of transcription
V$TALE - TALE homeodomain class recognizing TG motifs V$TBPF - Tata-binding protein factor
V$TCFF - TCF11 transcription factor V$TEAF - TEA/ATTS DNA binding domain factors
V$TTFF - Thyroid transcription factor-1 V$VBPF - Chicken vitellogenin gene binding protein factor
V$VMYB - AMV-viral myb oncogene V$WHZF - Winged Helix and ZF5 binding sites
V$XBBF - X-box binding factors V$XSEC - Xenopus seleno cystein t-RNA activiating factor
V$YY1F - Activator/repressor binding to transcription initiation site V$ZBPF - Zinc binding protein factor
V$ZF5F - ZF5 POZ domain zinc finger V$ZFIA - Zinc finger with interaction domain factors
 v3.1.2
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