ConCisE Scanner

Conserved Cis-Element Scanner: Genome-wide ortholog conserved Cis-element module search

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a) Enter basepairs ( to modify the default 10 KB sequence region )

b) Choose region : Upstream Downstream Upstream & Downstream

c) With respect to : First Exon Last Exon Gene

Select binding sites for search against genes :

Family Name And Description Matrix Name And Description

V$AARF - AARE binding factors

V$AARE.01 - Amino acid response element, ATF4 binding site

V$AARE_01 - Amino acid response element, ATF4 binding site

V$AHRR - AHR-arnt heterodimers and AHR-related factors

V$AHR.01 - Aryl hydrocarbon / dioxin receptor

V$AHRARNT.01 - Aryl hydrocarbon receptor / Arnt heterodimers

V$AHRARNT.02 - Aryl hydrocarbon / Arnt heterodimers, fixed core

V$AHRARNT_01 - aryl hydrocarbon receptor / Arnt heterodimers

V$AHRARNT_02 - aryl hydrocarbon / Arnt heterodimers, fixed core

V$AHRARNT_03 - AHR-arnt heterodimers and AHR-related factors

V$AHR_01 - aryl hydrocarbon / dioxin receptor

V$NXF_ARNT_01 - bHLH-PAS type transcription factors NXF/ARNT heterodimer

V$AP1F - AP1, Activating protein 1

V$AP1.01 - Activator protein 1

V$AP1.02 - Activator protein 1

V$AP1.03 - Activator protein 1

V$AP1FJ.01 - Activator protein 1

V$AP1FJ_01 - activator protein 1

V$AP1FJ_Q2 - activator protein 1

V$AP1_01 - AP-1

V$AP1_02 - activator protein 1

V$AP1_03 - activator protein 1

V$AP1_C - Ap-1 binding site

V$AP1_Q2 - activator protein 1

V$BACH1.01 - BTB/POZ-bZIP transcription factor BACH1 forms heterodimers with the small Maf protein family

V$BACH1_01 - Bach1

V$BACH2_01 - Bach2

V$BEL1_B - Bel-1 similar region

V$NFE2.01 - NF-E2 p45

V$NFE2_01 - NF-E2 p45

V$TCF11MAFG.01 - TCF11/MafG heterodimers, binding to subclass of AP1 sites

V$TCF11MAFG_01 - TCF11/MafG heterodimers

V$VMAF.01 - v-Maf

V$VMAF_01 - v-Maf

V$AP1R - MAF and AP1 related factors

V$BACH2.01 - Bach2 bound TRE

V$MAFA_01 - MAF and AP1 related factors

V$MARE_01 - MAF and AP1 related factors

V$MARE_02 - MAF and AP1 related factors

V$MARE_03 - MAF and AP1 related factors

V$MARE_ARE_01 - MAF and AP1 related factors

V$NFE2L2.01 - Nuclear factor (erythroid-derived 2)-like 2, NRF2

V$NFE2L2_01 - Nuclear factor (erythroid-derived 2)-like 2, NRF2

V$AP2F - Activator Protein 2

V$AP2.01 - Activator protein 2

V$AP2_01 - activator protein 2

V$AP2_02 - Activator protein 2 alpha

V$AP2_Q6 - activator protein 2

V$AP4R - AP4 and Related proteins

V$AP4.01 - Activator protein 4

V$AP4.02 - Activator protein 4

V$AP4.03 - Activator protein 4

V$AP4_01 - activator protein 4

V$AP4_02 - activator protein 4

V$AP4_03 - activator protein 4

V$AP4_Q5 - activator protein 4

V$AP4_Q6 - activator protein 4

V$LYL1_E12_01 - LYL1-E12 heterodimeric complex

V$PARAXIS_01 - Paraxis (TCF15), member of the Twist subfamily of Class B bHLH factors, forms heterodimers with E12

V$TAL1ALPHAE47. -

V$TAL1ALPHAE47.01 - Tal-1alpha/E47 heterodimer

V$TAL1ALPHAE47_01 - Tal-1alpha/E47 heterodimer

V$TAL1BETAE47.0 -

V$TAL1BETAE47.01 - Tal-1beta/E47 heterodimer

V$TAL1BETAE47_01 - Tal-1beta/E47 heterodimer

V$TAL1BETAHEB_01 - Tal-1beta/HEB heterodimer

V$TAL1BETAITF2.01 - Tal-1beta/ITF-2 heterodimer

V$TAL1BETAITF2_01 - Tal-1beta/ITF-2 heterodimer

V$TH1E47.01 - Thing1/E47 heterodimer, TH1 bHLH member specific expression in a variety of embryonic tissues

V$TH1E47_01 - Thing1/E47 heterodimer, TH1 bHLH member specific expression in a variety of embryonic tissues

V$AREB - Atp1a1 regulatory element binding

V$AREB6.01 - AREB6 (Atp1a1 regulatory element binding factor 6)

V$AREB6.02 - AREB6 (Atp1a1 regulatory element binding factor 6)

V$AREB6.03 - AREB6 (Atp1a1 regulatory element binding factor 6)

V$AREB6.04 - AREB6 (Atp1a1 regulatory element binding factor 6)

V$AREB6_01 - AREB6 (Atp1a1 regulatory element binding factor 6)

V$AREB6_02 - AREB6 (Atp1a1 regulatory element binding factor 6)

V$AREB6_03 - AREB6 (Atp1a1 regulatory element binding factor 6)

V$AREB6_04 - AREB6 (Atp1a1 regulatory element binding factor 6)

V$ARP1 - Apolipoprotein aI and cIII gene Repressor Protein

V$ARP1.01 - apolipoprotein AI regulatory protein 1

V$ARP1_01 - apolipoprotein AI regulatory protein 1

V$BARB - BARbiturate-Inducible El. box from Pro+eukaryot. genes

V$BARBIE.01 - Barbiturate-inducible element

V$BARBIE_01 - barbiturate-inducible element

V$BCL6 - POZ domain zinc finger expressed in B-Cells

V$BCL6.01 - POZ/zinc finger protein, transcriptional repressor, translocations observed in diffuse large cell lymphoma

V$BCL6.02 - POZ/zinc finger protein, transcriptional repressor, translocations observed in diffuse large cell lymphoma

V$BCL6_01 - POZ/zinc finger protein, transcriptional repressor, translocations observed in diffuse large cell lymphoma

V$BCL6_02 - POZ/zinc finger protein, transcriptional repressor, translocations observed in diffuse large cell lymphoma

V$BEL1 - Bel-1 similar region

V$BEL1.01 - Bel-1 similar region (defined in Lentivirus LTRs)

V$BEL1_01 - Bel-1 similar region

V$BNCF - Basonuclein rDNA transcription factor (PolI)

V$BNC.01 - Basonuclin, cooperates with USF1 in rDNA PolI transcription)

V$BNC_01 - Basonuclin, cooperates with USF1 in rDNA PolI transcription)

V$BRAC - Brachyury gene, mesoderm developmental factor

V$BRACH.01 - Brachyury

V$BRACH_01 - Brachyury

V$TBOX_01 - Brachyury gene, mesoderm developmental factor

V$TBX5.01 - T-Box factor 5 site (TBX5), mutations related to Holt-Oram syndrome

V$TBX5_01 - T-Box factor 5 site (TBX5), mutations related to Holt-Oram syndrome

V$TBX6_01 - Brachyury gene, mesoderm developmental factor

V$BRNF - Brn POU domain factors

V$BRN2.01 - POU factor Brn-2 (N-Oct 3)

V$BRN2_01 - POU factor Brn-2

V$BRN2_02 - Brn-2, POU-III protein class

V$BRN2_03 - Brn-2, POU-III protein class

V$BRN3.01 - POU transcription factor Brn-3

V$BRN3_01 - POU transcription factor Brn-3

V$BRN3_02 - Brn-3, POU-IV protein class

V$BRN4_01 - POU domain transcription factor brain 4

V$BRN5_01 - Brn-5, POU-VI protein class (also known as emb and CNS-1)

V$BRN5_02 - Brn POU domain factors

V$BRN5_03 - Brn POU domain factors

V$CABL - C-abl DNA binding sites

V$CABL.01 - Multifunctional c-Abl src type tyrosine kinase

V$CABL_01 - Multifunctional c-Abl src type tyrosine kinase

V$CART - Cart-1 (cartilage homeoprotein 1)

V$CART1.01 - Cart-1 (cartilage homeoprotein 1)

V$CART1_01 - Cart-1 (cartilage homeoprotein 1)

V$XVENT1_01 - Xenopus homeodomain factor Xvent-2; early BMP signaling response

V$XVENT2.01 - Xenopus homeodomain factor Xvent-2; early BMP signaling response

V$XVENT2_01 - Xenopus homeodomain factor Xvent-2; early BMP signaling response

V$CDEF - Cell cycle regulators: Cell cycle dependent element

V$CDE.01 - Cell cycle-dependent element, CDF-1 binding site (CDE/CHR tandem elements regulate cell cycle dependent repression)

V$CDE_01 - Cell cycle-dependent element, CDF-1 binding site (CDE/CHR tandem elements regulate cell cycle dependent repression)

V$CDXF - Vertebrate caudal related homeodomain protein

V$CDX1.01 - Intestine specific homeodomain factor CDX-1

V$CDX1_01 - Intestine specific homeodomain factor CDX-1

V$CDX2.01 - Cdx-2 mammalian caudal related intestinal transcr. factor

V$CDX2_01 - Cdx-2 mammalian caudal related intestinal transcr. factor

V$CDXA_01 - caudal type homeo box 1

V$CDXA_02 - caudal type homeo box 1

V$CEBP - Ccaat/Enhancer Binding Protein

V$CEBP.02 - CCAAT/enhancer binding protein

V$CEBPA_01 - CCAAT/enhancer binding protein beta

V$CEBPB.01 - CCAAT/enhancer binding protein beta

V$CEBPB_01 - CCAAT/enhancer binding protein beta

V$CEBPB_02 - CCAAT/enhancer binding protein beta

V$CEBP_01 - C/EBP

V$CEBP_02 - C/EBP binding site

V$CEBP_C - C/EBP binding site

V$CEBP_Q2 - C/EBP

V$CHOP - CHOP binding protein

V$CHOP.01 - Heterodimers of CHOP and C/EBPalpha

V$CHOP_01 - heterodimers of CHOP and C/EBPalpha

V$CHOP_02 - C/EBP homologous protein (CHOP)

V$CHRF - Cell cycle regulators: Cell cycle homology element

V$CHR.01 - Cell cycle gene homology region (CDE/CHR tandem elements regulate cell cycle dependent repression)

V$CHR_01 - Cell cycle gene homology region (CDE/CHR tandem elements regulate cell cycle dependent repression)

V$CIZF - CAS interating zinc finger protein

V$NMP4.01 - NMP4 (nuclear matrix protein 4) / CIZ (Cas-interacting zinc finger protein)

V$NMP4_01 - NMP4 (nuclear matrix protein 4) / CIZ (Cas-interacting zinc finger protein)

V$CLOX - CLOX and CLOX homology (CDP) factors

V$CDP.01 - Cut-like homeodomain protein

V$CDP.02 - Transcriptional repressor CDP

V$CDPCR3.01 - Cut-like homeodomain protein

V$CDPCR3HD.01 - cut-like homeodomain protein

V$CDPCR3HD_01 - cut-like homeodomain protein

V$CDPCR3_01 - cut-like homeodomain protein

V$CDP_01 - cut-like homeodomain protein

V$CDP_02 - transcriptional repressor CDP

V$CLOX.01 - Clox

V$CLOX_01 - Clox

V$CUT2_01 - Cut repeat II

V$CMYB - C-myb, cellular transcriptional activator

V$CMYB.01 - c-Myb, important in hematopoesis, cellular equivalent to avian myoblastosis virus oncogene v-myb

V$CMYB.02 - c-Myb, important in hematopoesis, cellular equivalent to avian myoblastosis virus oncogene v-myb

V$CMYB_01 - c-Myb

V$COMP - Factors which cooperate with myogenic proteins

V$COMP1.01 - COMP1, cooperates with myogenic proteins in multicomponent complex

V$COMP1_01 - COMP1

V$COUP - Repr. of RXR-mediated activ. & retinoic acid responses

V$COUP.01 - COUP antagonizes HNF-4 by binding site competition or synergizes by direct protein - protein interaction with HNF-4

V$COUP_01 - COUP/HNF-4 heterodimer

V$CP2F - CP2-erythrocyte Factor related to drosophila Elf1

V$CP2.01 - CP2

V$CP2.02 - LBP-1c (leader-binding protein-1c), LSF (late SV40 factor), CP2, SEF (SAA3 enhancer factor)

V$CP2_01 - CP2

V$CP2_02 - LBP-1c (leader-binding protein-1c), LSF (late SV40 factor), CP2, SEF (SAA3 enhancer factor)

V$CREB - Camp-Responsive Element Binding proteins

V$ATF.01 - Activating transcription factor

V$ATF.02 - Activating transcription factor

V$ATF2_01 - Activating transcription factor 2

V$ATF3_Q6 - ATF3

V$ATF6.02 - Activating transcription factor 6, member of b-zip family, induced by ER stress

V$ATF6_02 - Activating transcription factor 6, member of b-zip family, induced by ER stress

V$ATF_01 - activating transcription factor

V$ATF_02 - ATF binding site

V$ATF_B - ATF binding site

V$CJUN_ATF2_01 - c-Jun/ATF2 heterodimers

V$CREB.01 - cAMP-responsive element binding protein

V$CREB.02 - cAMP-responsive element binding protein

V$CREB.03 - cAMP-response element-binding protein

V$CREB.04 - cAMP-response element binding protein

V$CREBP1.01 - cAMP-responsive element binding protein 1

V$CREBP1.02 - CRE-binding protein 1

V$CREBP1CJUN_01 - CRE-binding protein 1/c-Jun heterodimer

V$CREBP1_01 - cAMP-responsive element binding protein 1

V$CREBP1_02 - CRE-binding protein 1

V$CREBP1_Q2 - CRE-binding protein 1

V$CREB_01 - cAMP-responsive element binding protein

V$CREB_02 - cAMP-responsive element binding protein

V$CREB_03 - cAMP-response element-binding protein

V$CREB_04 - cAMP-response element binding protein

V$CREB_Q2 - cAMP-response element-binding protein

V$CREB_Q4 - cAMP-response element binding protein

V$E4BP4.01 - E4BP4, bZIP domain, transcriptional repressor

V$E4BP4_01 - E4BP4

V$HLF.01 - Hepatic leukemia factor

V$HLF_01 - hepatic leukemia factor

V$TAXCREB.01 - Tax/CREB complex

V$TAXCREB.02 - Tax/CREB complex

V$TAXCREB_01 - Tax/CREB complex

V$TAXCREB_02 - Tax/CREB complex

V$VJUN.01 - v-Jun

V$VJUN_01 - v-Jun

V$DEAF - Homolog to deformed epidermal autoregulatory factor-1 from D. melanogaster

V$NUDR.01 - NUDR (nuclear DEAF-1 related transcriptional regulator protein)

V$NUDR_01 - NUDR (nuclear DEAF-1 related transcriptional regulator protein)

V$E2FF - E2F-myc activator/cell cycle regulator

V$E2F.01 - E2F, involved in cell cycle regulation, interacts with Rb p107 protein

V$E2F.02 - E2F, involved in cell cycle regulation, interacts with Rb p107 protein

V$E2F.03 - E2F, involved in cell cycle regulation, interacts with Rb p107 protein

V$E2F1_DP1_01 - E2F-1/DP-1 heterodimeric complex

V$E2F1_DP2_01 - E2F-1/DP-2 heterodimeric complex

V$E2F1_Q3 - E2F-myc activator/cell cycle regulator

V$E2F1_Q4 - E2F-myc activator/cell cycle regulator

V$E2F1_Q6 - E2F-myc activator/cell cycle regulator

V$E2F4_DP1_01 - E2F-4/DP-1 heterodimeric complex

V$E2F4_DP2_01 - E2F-4/DP-2 heterodimeric complex

V$E2F_01 - E2F-myc activator/cell cycle regulator

V$E2F_02 - E2F-myc activator/cell cycle regulator

V$E2F_03 - E2F, involved in cell cycle regulation, interacts with Rb p107 protein

V$E2F_1Q6 - E2F-myc activator/cell cycle regulator

V$E2F_2Q6 - E2F-myc activator/cell cycle regulator

V$E2F_Q3 - E2F-myc activator/cell cycle regulator

V$E2F_Q4 - E2F-myc activator/cell cycle regulator

V$E2F_Q6 - E2F-myc activator/cell cycle regulator

V$RB_E2F1_DP1_01 - RB/E2F-1/DP-1 heterotrimeric complex

V$E2TF - papillioma virus E2 Transcriptional activator

V$E2.01 - BPV bovine papilloma virus regulator E2

V$E2.02 - Papilloma virus regulator E2

V$E2_01 - papilloma virus regulator E2

V$E2_02 - papilloma virus regulator E2

V$E2_Q6 - papilloma virus regulator E2

V$E4FF - Ubiquitous GLI - Krueppel like zinc finger involved in cell cycle regulation

V$E4F.01 - GLI-Krueppel-related transcription factor, regulator of adenovirus E4 promoter

V$E4F_01 - GLI-Krueppel-related transcription factor, regulator of adenovirus E4 promoter

V$EBOR - E-box related factors

V$DELTAEF1.01 - deltaEF1

V$DELTAEF1_01 - deltaEF1

V$SIP1_01 - Smad-interacting protein

V$XBP1.01 - X-box-binding protein 1

V$XBP1_01 - X-box-binding protein 1

V$EBOX - E-box binding factors

V$ARNT.01 - AhR nuclear translocator homodimers

V$ARNT_01 - AhR nuclear translocator homodimers

V$ATF6.01 - Member of b-zip family, induced by ER damage/stress, binds to the ERSE in association with NF-Y

V$ATF6_01 - Member of b-zip family, induced by ER damage/stress

V$MAX_01 - Max

V$MYCMAX.02 - c-Myc/Max heterodimer

V$MYCMAX.03 - MYC-MAX binding sites

V$MYCMAX_01 - c-Myc/Max heterodimer

V$MYCMAX_02 - c-Myc/Max heterodimer

V$MYCMAX_03 - MYC-MAX binding sites

V$MYCMAX_B - MYC-MAX binding sites

V$NMYC.01 - N-Myc

V$NMYC_01 - N-Myc

V$SREBP.01 - Sterol regulatory element binding protein 1 and 2

V$SREBP.02 - Sterol regulatory element binding protein

V$SREBP.03 - Sterol regulatory element binding protein

V$SREBP1_01 - sterol regulatory element-binding protein 1

V$SREBP1_02 - sterol regulatory element-binding protein 1

V$SREBP_01 - sterol regulatory element-binding protein

V$SREBP_02 - Sterol regulatory element binding protein

V$SREBP_03 - Sterol regulatory element binding protein

V$USF.01 - Upstream stimulating factor

V$USF.02 - Upstream stimulating factor

V$USF.03 - Upstream stimulating factor

V$USF_01 - upstream stimulating factor

V$USF_02 - USF

V$USF_03 - upstream stimulating factor

V$USF_04 - Upstream stimulating factor 1/2

V$USF_C - USF binding site

V$USF_Q6 - upstream stimulating factor

V$ECAT - Enhancer CCAAT binding factors

V$NFY.01 - Nuclear factor Y (Y-box binding factor)

V$NFY.02 - Nuclear factor Y (Y-box binding factor)

V$NFY.03 - Nuclear factor Y (Y-box binding factor)

V$NFY_01 - nuclear factor Y (Y-box binding factor)

V$NFY_02 - nuclear factor Y (Y-box binding factor)

V$NFY_03 - nuclear factor Y (Y-box binding factor)

V$NFY_C - NF-Y binding site

V$NFY_Q6 - nuclear factor Y (Y-box binding factor)

V$EGRF - EGR/nerve growth Factor Induced protein C & rel. fact.

V$CKROX_01 - Collagen krox protein (zinc finger protein 67 - zfp67)

V$EGR1.01 - Egr-1/Krox-24/NGFI-A immediate-early gene product

V$EGR1_01 - Egr-1/Krox-24/NGFI-A immediate-early gene product

V$EGR1_02 - EGR1, early growth response 1

V$EGR2_01 - Egr-2/Krox-20 early growth response gene product

V$EGR3.01 - early growth response gene 3 product

V$EGR3_01 - early growth response gene 3 product

V$NGFIC.01 - Nerve growth factor-induced protein C

V$NGFIC_01 - nerve growth factor-induced protein C

V$WT1.01 - Wilms Tumor Suppressor

V$WT1_01 - Wilms Tumor Suppressor

V$EKLF - Basic and erythroid Krueppel like factors

V$BKLF.01 - Basic krueppel-like factor (KLF3)

V$BKLF_01 - Basic krueppel-like factor (KLF3)

V$EKLF.01 - Erythroid krueppel like factor (EKLF)

V$EKLF_01 - Erythroid krueppel like factor (EKLF)

V$KKLF_01 - Kidney-enriched kruppel-like factor, KLF15

V$EREF - Estrogen Response Elements

V$ER.01 - Estrogen receptor

V$ER.02 - Canonical palindromic estrogen response element (ERE)

V$ERR_01 - Estrogen related receptor

V$ER_01 - estrogen receptor

V$ER_02 - Canonical palindromic estrogen response element (ERE)

V$ER_03 - Estrogen response elements

V$ETSF - Human and murine ETS1 factors

V$CETS1P54.01 - c-Ets-1(p54)

V$CETS1P54_01 - c-Ets-1(p54)

V$CETS1P54_02 - c-Ets-1(p54)

V$ELF2.01 - Ets - family member ELF-2 (NERF1a)

V$ELF2_01 - Ets - family member ELF-2 (NERF1a)

V$ELK1.01 - Elk-1

V$ELK1.02 - Elk-1

V$ELK1_01 - Elk-1

V$ELK1_02 - Elk-1

V$ETS1.01 - c-Ets-1 binding site

V$ETS1_01 - c-Ets-1 binding site

V$ETS1_B - c-Ets-1 binding site

V$ETS2.01 - c-Ets-2 binding site

V$ETS2_01 - c-Ets-2 binding site

V$ETS2_B - c-Ets-2 binding site

V$FLI.01 - ETS family member FLI

V$FLI_01 - ETS family member FLI

V$GABP.01 - GABP: GA binding protein

V$GABPB1_01 - GA repeat binding protein, beta 1)

V$GABP_01 - GABP: GA binding protein

V$GABP_B - GABP: GA binding protein

V$NRF2.01 - Nuclear respiratory factor 2

V$NRF2_01 - nuclear respiratory factor 2

V$PDEF_01 - Prostate-derived Ets factor

V$PEA3_01 - Human and murine ETS1 factors

V$PU1.01 - Pu.1 (Pu120) Ets-like transcription factor identified in lymphoid B-cells

V$PU1_01 - Pu.1 (Pu120) Ets-like transcription factor identified in lymphoid B-cells

V$PU1_B - Pu.1 (Pu120) Ets-like transcription factor identified in lymphoid B-cells

V$SPI1_PU1_01 - Spleen focus forming virus (SFFV) proviral integration oncogene Spi1/transcription factor PU.1

V$SPI1_PU1_02 - Spleen focus forming virus (SFFV) proviral integration oncogene Spi1/transcription factor PU.1

V$SPIB_01 - Spi-B transcription factor (Spi-1/PU.1 related)

V$EVI1 - EVI1-myleoid transforming protein

V$EVI1.01 - Ecotropic viral integration site 1 encoded factor

V$EVI1.02 - Ecotropic viral integration site 1 encoded factor

V$EVI1.03 - Ecotropic viral integration site 1 encoded factor

V$EVI1.04 - Ecotropic viral integration site 1 encoded factor

V$EVI1.05 - Ecotropic viral integration site 1 encoded factor

V$EVI1.06 - Ecotropic viral integration site 1 encoded factor

V$EVI1_01 - ectopic viral integration site 1 encoded factor

V$EVI1_02 - ectopic viral integration site 1 encoded factor

V$EVI1_03 - ectopic viral integration site 1 encoded factor

V$EVI1_04 - ectopic viral integration site 1 encoded factor

V$EVI1_05 - ectopic viral integration site 1 encoded factor

V$EVI1_06 - ectopic viral integration site 1 encoded factor

V$EVI1_07 - Evi-1 zinc finger protein, carboxy-terminal zinc finger domain

V$MEL1_01 - MEL1 (MDS1/EVI1-like gene 1) DNA-binding domain 1

V$MEL1_02 - MEL1 (MDS1/EVI1-like gene 1) DNA-binding domain 2

V$MEL1_03 - MEL1 (MDS1/EVI1-like gene 1) DNA-binding domain 2

V$FAST - FAST-1 SMAD interacting proteins

V$FAST1.01 - FAST-1 SMAD interacting protein

V$FAST1_01 - FAST-1 SMAD interacting protein

V$FAST1_02 - FAST-1 SMAD interacting proteins

V$FKHD - Fork Head Domain factors

V$FHXA_01 - Fork head homologous X binds DNA with a dual sequence specificity (FHXA and FHXB)

V$FHXB_01 - Fork head homologous X binds DNA with a dual sequence specificity (FHXA and FHXB)

V$FKHRL1.01 - Fkh-domain factor FKHRL1 (FOXO)

V$FKHRL1_01 - Fkh-domain factor FKHRL1 (FOXO)

V$FREAC2.01 - Fork head related activator-2 (FOXF2)

V$FREAC2_01 - Fork head RElated ACtivator-2

V$FREAC3.01 - Fork head related activator-3 (FOXC1)

V$FREAC3_01 - Fork head RElated ACtivator-3

V$FREAC4.01 - Fork head related activator-4 (FOXD1)

V$FREAC4_01 - Fork head RElated ACtivator-4

V$FREAC7.01 - Fork head related activator-7 (FOXL1)

V$FREAC7_01 - Fork head RElated ACtivator-7

V$HFH1.01 - HNF-3/Fkh Homolog 1 (FOXQ1)

V$HFH1_01 - HNF-3/Fkh Homolog 1

V$HFH2.01 - HNF-3/Fkh Homolog 2 (FOXD3)

V$HFH2_01 - HNF-3/Fkh Homolog 2

V$HFH3.01 - HNF-3/Fkh Homolog 3 (FOXI1, Freac-6)

V$HFH3_01 - HNF-3/Fkh Homolog 3 (= Freac-6)

V$HFH8.01 - HNF-3/Fkh Homolog-8 (FOXF1)

V$HFH8_01 - HNF-3/Fkh Homolog-8

V$HNF3B.01 - Hepatocyte Nuclear Factor 3beta (FOXA2)

V$HNF3B_01 - Hepatocyte Nuclear Factor 3beta

V$ILF1_01 - Winged-helix transcription factor IL-2 enhancer binding factor (ILF), forkhead box K2 (FOXK2)

V$XFD1.01 - Xenopus fork head domain factor 1 (FoxA4a)

V$XFD1_01 - Xenopus fork head domain factor 1

V$XFD2.01 - Xenopus fork head domain factor 2 (FoxI1a)

V$XFD2_01 - Xenopus fork head domain factor 2

V$XFD3.01 - Xenopus fork head domain factor 3 (FoxA2a)

V$XFD3_01 - Xenopus fork head domain factor 3

V$GABF - GA-boxes

V$GAGA.01 - GAGA-Box

V$GAGA_01 - GAGA-Box

V$GATA - GATA binding factors

V$GATA.01 - GATA binding factor

V$GATA1.01 - GATA-binding factor 1

V$GATA1.02 - GATA-binding factor 1

V$GATA1.03 - GATA-binding factor 1

V$GATA1.04 - GATA-binding factor 1

V$GATA1.05 - GATA-binding factor 1

V$GATA1_01 - GATA-binding factor 1

V$GATA1_02 - GATA-binding factor 1

V$GATA1_03 - GATA-binding factor 1

V$GATA1_04 - GATA-binding factor 1

V$GATA1_05 - GATA-binding factor 1

V$GATA1_06 - GATA-binding factor 1

V$GATA2.01 - GATA-binding factor 2

V$GATA2.02 - GATA-binding factor 2

V$GATA2_01 - GATA-binding factor 2

V$GATA2_02 - GATA-binding factor 2

V$GATA2_03 - GATA-binding factor 2

V$GATA3.01 - GATA-binding factor 3

V$GATA3.02 - GATA-binding factor 3

V$GATA3_01 - GATA-binding factor 3

V$GATA3_02 - GATA-binding factor 3

V$GATA3_03 - GATA-binding factor 3

V$GATA_01 - GATA binding site (consensus)

V$GATA_C - GATA binding site

V$LMO2COM.02 - complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 2

V$LMO2COM_02 - complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 2

V$GFI1 - Growth Factor Independence-transcriptional repressor

V$GFI1.01 - Growth factor independence 1 zinc finger protein acts as transcriptional repressor

V$GFI1B.01 - Growth factor independence 1 zinc finger protein Gfi-1B

V$GFI1B_01 - Growth factor independence 1 zinc finger protein Gfi-1B

V$GFI1_01 - growth factor independence 1

V$GFI1_02 - Growth factor independence 1

V$GfI1B.01 - Growth factor independence 1 zinc finger protein Gfi-1B

V$GfI1B_01 - Growth factor independence 1 zinc finger protein Gfi-1B

V$GKLF - Gut-enriched Krueppel like binding factor

V$GKLF.01 - Gut-enriched Krueppel-like factor

V$GKLF_01 - gut-enriched Krueppel-like factor

V$GKLF_02 - Gut-enriched Krueppel-like factor

V$GLIF - GLI zinc finger family

V$GLI1.01 - Zinc finger transcription factor GLI1

V$GLI1_01 - Zinc finger transcription factor GLI1

V$GLIS3_01 - GLI zinc finger family

V$ZIC2_01 - Zinc finger transcription factor, Zic family member 2 (odd-paired homolog, Drosophila)

V$GREF - Glucocorticoid responsive and related elements

V$ARE.01 - Androgene receptor binding site

V$ARE_01 - Androgene receptor binding site

V$ARE_02 - Androgene receptor binding site

V$AR_01 - Androgen receptor

V$AR_Q2 - Androgen receptor

V$GRE.01 - Glucocorticoid receptor, C2C2 zinc finger protein binds glucocorticoid dependent to GREs

V$GRE_01 - Glucocorticoid receptor, C2C2 zinc finger protein binds glucocorticoid dependent to GREs

V$GRE_02 - Glucocorticoid responsive and related elements

V$GRE_C - Glucocorticoid response element

V$GR_Q6 - glucocorticoid receptor

V$PRE.01 - Progesterone receptor binding site

V$PRE_01 - Progesterone receptor binding site

V$HAML - Human acute myelogenous leukemia factors

V$AML1.01 - AML1/CBFA2 Runt domain binding site

V$AML1_01 - runt-factor AML-1

V$AML3.01 - Runt-related transcription factor 2 / CBFA1 (core-binding factor, runt domain, alpha subunit 1)

V$AML3_01 - Runt-related transcription factor 2 / CBFA1 (core-binding factor, runt domain, alpha subunit 1)

V$HAND - bHLH transcription factor dimer of HAND2 and E12

V$HAND2_E12.01 - Heterodimers of the bHLH transcription factors HAND2 (Thing2) and E12

V$HAND2_E12_01 - Heterodimers of the bHLH transcription factors HAND2 (Thing2) and E12

V$SCX_01 - Twist subfamily of class B bHLH transcription factors

V$HEAT - Heat shock factors

V$HSF1.01 - Heat shock factor 1

V$HSF1_01 - heat shock factor 1

V$HSF1_02 - Heat shock factor 1

V$HSF1_03 - Heat shock factor 1

V$HSF2_01 - HSF2

V$HSF2_02 - Heat shock factor 2

V$HEN1 - E-box binding factor without transcript. activation

V$HEN1.01 - HEN1

V$HEN1.02 - HEN1

V$HEN1_01 - HEN1

V$HEN1_02 - HEN1

V$HESF - Vertebrate homologues of enhancer of split complex

V$HELT_01 - Hey-like bHLH-transcriptional repressor

V$HES1.01 - Drosophila hairy and enhancer of split homologue 1 (HES-1)

V$HES1_01 - Drosophila hairy and enhancer of split homologue 1 (HES-1)

V$HES1_02 - Drosophila hairy and enhancer of split homologue 1 (HES-1)

V$HIFF - Hypoxia inducible factor, bHLH / PAS protein family

V$CLOCK_BMAL1.01 - Binding site of Clock/BMAL1 heterodimer, NPAS2/BMAL1 heterodimer

V$CLOCK_BMAL1_01 - Binding site of Clock/BMAL1 heterodimer, NPAS2/BMAL1 heterodimer

V$DEC1.01 - Basic helix-loop-helix protein known as Dec1, Stra13 or Sharp2

V$DEC1_01 - Basic helix-loop-helix protein known as Dec1, Stra13 or Sharp2

V$DEC2_01 - Basic helix-loop-helix protein known as Dec2 or Sharp2

V$HIF1.01 - Hypoxia induced factor-1 (HIF-1)

V$HIF1.02 - Hypoxia inducible factor, bHLH / PAS protein family

V$HIF1_01 - Hypoxia induced factor-1 (HIF-1)

V$HIF1_02 - Hypoxia inducible factor, bHLH / PAS protein family

V$HIF1_Q5 - HIF-1

V$HRE_01 - Hypoxia inducible factor, bHLH/PAS protein family

V$HMTB - Human muscle-specific Mt binding site

V$MTBF.01 - Muscle-specific Mt binding site

V$MTBF_01 - muscle-specific Mt binding site

V$MTBF_B - muscle-specific Mt binding site

V$HNF1 - Hepatic Nuclear Factor 1

V$HNF1.01 - Hepatic nuclear factor 1

V$HNF1.02 - Hepatic nuclear factor 1

V$HNF1.03 - Hepatic nuclear factor 1

V$HNF1_01 - hepatic nuclear factor 1

V$HNF1_02 - Hepatic nuclear factor 1

V$HNF1_03 - Hepatic nuclear factor 1

V$HNF1_C - Hepatic nuclear factor 1

V$HNF4 - Hepatic Nuclear Factor 4

V$HNF4.01 - Hepatic nuclear factor 4

V$HNF4.02 - Hepatic nuclear factor 4

V$HNF4_01 - Hepatic nuclear factor 4

V$HNF4_01_B - Hepatic nuclear factor 4

V$HNF4_02 - Hepatic nuclear factor 4

V$HNF4_02_B - Hepatic nuclear factor 4

V$HNF6 - Onecut Homeodomain factor HNF6

V$HNF6.01 - Liver enriched Cut - Homeodomain transcription factor HNF6 (ONECUT)

V$HNF6_01 - Liver enriched Cut - Homeodomain transcription factor HNF6 (ONECUT)

V$OC2.01 - CUT-homeodomain transcription factor Onecut-2

V$OC2_01 - CUT-homeodomain transcription factor Onecut-2

V$HOMS - Homeodomain subfamily S8

V$S8.01 - Binding site for S8 type homeodomains

V$S8_01 - Homeodomain subfamily S8

V$HOXF - Factors with moderate activity to homeo domain consensus sequence

V$BARX2_01 - Barx2, homeobox transcription factor that preferentially binds to paired TAAT motifs

V$CRX.01 - Cone-rod homeobox-containing transcription factor / otx-like homeobox gene

V$CRX_01 - Cone-rod homeobox-containing transcription factor / otx-like homeobox gene

V$EN1.01 - Homeobox protein engrailed (en-1)

V$EN1_01 - engrailed 1

V$GSC.01 - Vertebrate bicoid-type homeodomain protein Goosecoid

V$GSC_01 - Vertebrate bicoid-type homeodomain protein Goosecoid

V$GSH1.01 - Homeobox transcription factor Gsh-1

V$GSH1_01 - Homeobox transcription factor Gsh-1

V$GSH2_01 - Homeodomain transcription factor Gsh-2

V$HOX1-3.01 - Hox-1.3, vertebrate homeobox protein

V$HOX1-3_01 - Hox-1.3, vertebrate homeobox protein

V$HOX13_01 - Hox-1.3

V$HOXA3_01 - HOXA3

V$HOXA9.01 - Member of the vertebrate HOX - cluster of homeobox factors

V$HOXA9_01 - Member of the vertebrate HOX - cluster of homeobox factors

V$HOXB9_01 - Abd-B-like homeodomain protein Hoxb-9

V$HOXC13_01 - Homeodomain transcription factor HOXC13

V$NANOG_01 - Homeobox transcription factor Nanog

V$OTX2.01 - Homeodomain transcription factor Otx2 (homolog of Drosophila orthodenticle)

V$OTX2_01 - Homeodomain transcription factor Otx2 (homolog of Drosophila orthodenticle)

V$PHOX2_01 - Phox2a (ARIX) and Phox2b

V$PTX1.01 - Pituitary Homeobox 1 (Ptx1, Pitx-1)

V$PTX1_01 - Pituitary Homeobox 1 (Ptx1)

V$HOXT - HOXA9 - MEIS1 - PBX ternary complex

V$MEIS1_HOXA9.0 -

V$MEIS1_HOXA9.01 - Homeobox protein MEIS1 binding site

V$MEIS1_HOXA9_01 - Homeobox protein MEIS1 binding site

V$IKRS - Ikaros zinc finger family

V$IK1.01 - Ikaros 1, potential regulator of lymphocyte differentiation

V$IK1_01 - Ikaros 1

V$IK2.01 - Ikaros 2, potential regulator of lymphocyte differentiation

V$IK2_01 - Ikaros 2

V$IK3.01 - Ikaros 3, potential regulator of lymphocyte differentiation

V$IK3_01 - Ikaros 3

V$LYF1_01 - LyF-1

V$IRFF - Interferon Regulatory Factors

V$IRF1.01 - Interferon regulatory factor 1

V$IRF1_01 - interferon regulatory factor 1

V$IRF2.01 - Interferon regulatory factor 2

V$IRF2_01 - interferon regulatory factor 2

V$IRF3.01 - Interferon regulatory factor 3 (IRF-3)

V$IRF3_01 - Interferon regulatory factor 3 (IRF-3)

V$IRF4.01 - Interferon regulatory factor (IRF)-related protein (NF-EM5, PIP, LSIRF, ICSAT)

V$IRF4_01 - Interferon regulatory factor (IRF)-related protein (NF-EM5, PIP, LSIRF, ICSAT)

V$IRF4_02 - Interferon regulatory factor 4

V$IRF7.01 - Interferon regulatory factor 7 (IRF-7)

V$IRF7_01 - IRF-7

V$ISRE.01 - Interferon-stimulated response element

V$ISRE_01 - interferon-stimulated response element

V$LEFF - LEF1/TCF

V$LEF1.01 - TCF/LEF-1, involved in the Wnt signal transduction pathway

V$LEF1.02 - TCF/LEF-1, involved in the Wnt signal transduction pathway

V$LEF1_01 - TCF/LEF-1, involved in the Wnt signal transduction pathway

V$LEF1_02 - TCF/LEF-1, involved in the Wnt signal transduction pathway

V$LHXF - Lim homeodomain factors

V$LHX3.01 - Homeodomain binding site in LIM/Homeodomain factor LHX3

V$LHX3_01 - Homeodomain binding site in LIM/Homeodomain factor LHX3

V$LHX3_02 - Lim homeodomain factors

V$LMX1B.01 - LIM-homeodomain transcription factor

V$LMX1B_01 - LIM-homeodomain transcription factor

V$LTUP - Lentiviral Tata UPstream element

V$TAACC.01 - Lentiviral TATA upstream element

V$TAACC_01 - Lentiviral TATA upstream element

V$TAACC_B - Lentiviral TATA upstream el.

V$MAZF - Myc associated zinc fingers

V$MAZ.01 - Myc associated zinc finger protein (MAZ)

V$MAZR.01 - MYC-associated zinc finger protein related transcription factor

V$MAZR_01 - MAZR

V$MAZ_01 - Myc associated zinc finger protein (MAZ)

V$MEF2 - MEF2-myocyte-specific enhancer-binding factor

V$AMEF2.01 - Myocyte enhancer factor

V$AMEF2_01 - myocyte enhancer factor

V$AMEF2_Q6 - myocyte enhancer factor

V$HMEF2.01 - Myocyte enhancer factor

V$HMEF2_01 - myocyte enhancer factor

V$HMEF2_Q6 - myocyte enhancer factor

V$MEF2.01 - Myogenic enhancer factor 2

V$MEF2.02 - Myogenic MADS factor MEF-2

V$MEF2.04 - Myogenic MADS factor MEF-2

V$MEF2.05 - MEF2

V$MEF2_01 - myogenic enhancer factor 2

V$MEF2_02 - myogenic MADS factor MEF-2

V$MEF2_03 - myogenic MADS factor MEF-2

V$MEF2_04 - myogenic MADS factor MEF-2

V$MEF2_05 - MEF2

V$MEF2_06 - Myocyte-specific enhancer factor 2

V$MEF2_07 - Myocyte-specific enhancer factor 2

V$MEF2_Q6 - MEF2_Q6

V$MMEF2.01 - Myocyte enhancer factor

V$MMEF2_01 - myocyte enhancer factor

V$MMEF2_Q6 - myocyte enhancer factor

V$RSRFC4.01 - Related to serum response factor, C4

V$RSRFC4_01 - related to serum response factor, C4

V$RSRFC4_02 - related to serum response factor, C4

V$RSRFC4_Q2 - RSRFC4_Q2

V$SL1_01 - Member of the RSRF (related to serum response factor) protein family from Xenopus laevis

V$MEF3 - MEF3 BINDING SITES

V$MEF3.01 - MEF3 binding site, present in skeletal muscle-specific transcriptional enhancers

V$MEF3_01 - MEF3 binding site, present in skeletal muscle-specific transcriptional enhancers

V$MEF3_B - MEF3

V$MEIS - Homeodomain factor aberrantly expressed in myeloid leukemia

V$MEIS1.01 - Binding site for monomeric Meis1 homeodomain protein

V$MEIS1A/HOXA9_01 - MEIS1A/HOXA9

V$MEIS1AHOXA9_01 - Meis-1 (myeloid ecotropic viral integration site 1)

V$MEIS1B/HOXA9_01 - Meis-1 (myeloid ecotropic viral integration site 1)

V$MEIS1_01 - Meis-1 (myeloid ecotropic viral integration site 1)

V$MINI - Muscle INItiator

V$MINI19_B - muscle initiator sequence-19

V$MINI20_B - muscle initiator sequence-20

V$MUSCLE_INI.01 - Muscle Initiator Sequence

V$MUSCLE_INI.02 - Muscle Initiator Sequence

V$MUSCLE_INI_01 - Muscle Initiator Sequence

V$MUSCLE_INI_02 - Muscle Initiator Sequence

V$MUSCLE_INI_03 - Muscle Initiator Sequence

V$MUSCLE_INI_B - Muscle initiator

V$MITF - Microphthalmia transcription factor

V$MIT.01 - MIT (microphthalmia transcription factor) and TFE3

V$MIT_01 - MIT (microphthalmia transcription factor) and TFE3

V$MOKF - Mouse Krueppel like factor

V$MOK2.01 - Ribonucleoprotein associated zinc finger protein MOK-2 (mouse)

V$MOK2.02 - Ribonucleoprotein associated zinc finger protein MOK-2 (human)

V$MOK2_01 - Ribonucleoprotein associated zinc finger protein MOK-2

V$MOK2_02 - Ribonucleoprotein associated zinc finger protein MOK-2 (human)

V$MTF1 - Metal induced transcription factor

V$MTF-1.01 - Metal transcription factor 1, MRE

V$MTF-1_01 - Metal transcription factor 1, MRE

V$MTF-1_B - Metal transcription factor 1, MRE

V$MYOD - MYOblast Determining factor

V$E47.01 - MyoD/E47 and MyoD/E12 dimers

V$E47.02 - TAL1/E47 dimers

V$E47_01 - E47

V$E47_02 - E47

V$LMO2COM.01 - Complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 1

V$LMO2COM_01 - complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 1

V$MYF5.01 - Myf5 myogenic bHLH protein

V$MYF5_01 - Myf5 myogenic bHLH protein

V$MYOD.01 - Myoblast determination gene product

V$MYOD.02 - Myoblast determining factor

V$MYOD_01 - myoblast determination gene product

V$MYOD_02 - myoblast determining factor

V$MYOD_Q6 - myoblast determining factor

V$MYOGENIN_01 - Myogenic bHLH protein myogenin (myf4)

V$MYOGENIN_02 - Myoblast determining factors

V$TAL1_E2A_01 - Complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 1

V$MYOF - MYOgenic Factors

V$MYOGNF1.01 - Myogenin / nuclear factor 1 or related factors

V$MYOGNF1_01 - myogenin / nuclear factor 1 or related factors

V$NF1_Q6 - nuclear factor 1

V$MYT1 - MYT1 C2HC zinc finger protein

V$MYT1.01 - MyT1 zinc finger transcription factor involved in primary neurogenesis

V$MYT1.02 - MyT1 zinc finger transcription factor involved in primary neurogenesis

V$MYT1L.01 - Myelin transcription factor 1-like, neuronal C2HC zinc finger factor 1

V$MYT1L_01 - Myelin transcription factor 1-like, neuronal C2HC zinc finger factor 1

V$MYT1_01 - MyT1 zinc finger transcription factor involved in primary neurogenesis

V$MYT1_01_B - MyT1 zinc finger transcription factor involved in primary neurogenesis

V$MYT1_02 - MyT1 zinc finger transcription factor involved in primary neurogenesis

V$MYT1_02_B - MyT1 zinc finger transcription factor involved in primary neurogenesis

V$MZF1 - Myeloid Zinc Finger 1 factors

V$MZF1.01 - Myeloid zinc finger protein MZF1

V$MZF1_01 - myeloid zinc finger protein

V$MZF1_02 - MZF1

V$MZF1_03 - Myeloid zinc finger 1 factors

V$NEUR - NeuroD, Beta2, HLH domain

V$NEUROD1.01 - DNA binding site for NEUROD1 (BETA-2 / E47 dimer)

V$NEUROD1_01 - DNA binding site for NEUROD1 (BETA-2 / E47 dimer)

V$NEUROG.01 - Neurogenin 1 and 3 (ngn1/3) binding sites

V$NEUROG_01 - Neurogenin 1 and 3 (ngn1/3) binding sites

V$NGN_NEUROD_01 - NeuroD, Beta2, HLH domain

V$NF1F - Nuclear Factor 1

V$NF1.01 - Nuclear factor 1

V$NF1.02 - Nuclear factor 1 (CTF1)

V$NF1_01 - nuclear factor 1

V$NF1_02 - Nuclear factor 1 (CTF1)

V$NFAT - Nuclear Factor of Activated T-cells

V$NFAT.01 - Nuclear factor of activated T-cells

V$NFAT5_01 - Nuclear factor of activated T-cells 5

V$NFAT_01 - Nuclear factor of activated T-cells

V$NFAT_Q6 - Nuclear factor of activated T-cells

V$NFKB - Nuclear Factor Kappa B/c-rel

V$CREL.01 - c-Rel

V$CREL_01 - Nuclear Factor Kappa B/c-rel

V$HIVEP1_01 - ZAS domain transcription factor: human immunodeficiency virus type 1 enhancer-binding protein-1 (HIVEP1), major histocompatibility complex-binding protein-1 (MBP-1), positive regulatory domain II-binding factor 1 (PRDII-BF1)

V$NFKAPPAB.01 - NF-kappaB

V$NFKAPPAB.02 - NF-kappaB

V$NFKAPPAB.03 - NF-kappaB

V$NFKAPPAB50.01 - NF-kappaB (p50)

V$NFKAPPAB50_01 - NF-kappaB (p50)

V$NFKAPPAB65_01 - NF-kappaB (p65)

V$NFKAPPAB_01 - NF-kappaB

V$NFKAPPAB_02 - NF-kappaB

V$NFKAPPAB_03 - NF-kappaB

V$NFKB_C - NF-kappa-B binding site

V$NFKB_Q6 - NF-kappaB

V$NKXH - NKX/DLX - homeodomain sites

V$DLX1.01 - DLX-1, -2, and -5 binding sites

V$DLX1_01 - DLX-1, -2, and -5 binding sites

V$DLX3.01 - Distal-less 3 homeodomain transcription factor

V$DLX3_01 - Distal-less 3 homeodomain transcription factor

V$HMX2_01 - Hmx2/Nkx5-2 homeodomain transcription factor

V$HMX2_02 - Hmx2/Nkx5-2 homeodomain transcription factor

V$HMX3.01 - H6 homeodomain HMX3/Nkx5.1 transcription factor

V$HMX3_01 - H6 homeodomain HMX3/Nkx5.1 transcription factor

V$HMX3_02 - Hmx3/Nkx5-1 homeodomain transcription factor

V$MSX.01 - Homeodomain proteins MSX-1 and MSX-2

V$MSX2.01 - Muscle segment homeo box 2, homologue of Drosophila (HOX 8)

V$MSX2_01 - Muscle segment homeo box 2, homologue of Drosophila (HOX 8)

V$MSX_01 - Homeodomain proteins MSX-1 and MSX-2

V$NKX22_01 - Nkx2-2

V$NKX25.01 - Homeo domain factor Nkx-2.5/Csx, tinman homolog, high affinity sites

V$NKX25.02 - Homeo domain factor Nkx-2.5/Csx, tinman homolog low affinity sites

V$NKX25_01 - homeo domain factor Nkx-2.5/Csx, tinman homolog

V$NKX25_02 - homeo domain factor Nkx-2.5/Csx, tinman homolog

V$NKX25_03 - NKX homeodomain factors

V$NKX31.01 - Prostate-specific homeodomain protein NKX3.1

V$NKX31_01 - prostate-specific homeodomain protein NKX3.1

V$NKX32.01 - Homeodomain protein NKX3.2 (BAPX1, NKX3B, Bagpipe homolog)

V$NKX32_01 - Homeodomain protein NKX3.2 (BAPX1, NKX3B, Bagpipe homolog)

V$NKX3A_01 - NKX3A

V$NOLF - Neuron-specific-olfactory factor

V$OLF1.01 - Olfactory neuron-specific factor

V$OLF1_01 - olfactory neuron-specific factor

V$OLF1_02 - Neuron-specific-olfactory factor

V$NRLF - Neural retina leucine zipper

V$NRL.01 - Neural retinal basic leucine zipper factor (bZIP)

V$NRL_01 - Neural retinal basic leucine zipper factor (bZIP)

V$NRSF - Neuron-Restrictive Silencer Factor

V$NRSE.01 - Neural-restrictive-silencer-element

V$NRSE_01 - neural-restrictive-silencer-element

V$NRSE_B - neural-restrictive-silencer-element

V$NRSF.01 - Neuron-restrictive silencer factor

V$NRSF_01 - neuron-restrictive silencer factor

V$OAZF - Olfactory associated zinc finger protein

V$ROAZ.01 - Rat C2H2 Zn finger protein involved in olfactory neuronal differentiation

V$ROAZ_01 - Rat C2H2 Zn finger protein involved in olfactory neuronal differentiation

V$OCT1 - Octamer binding protein

V$OCT.01 - Octamer binding site (OCT1/OCT2)

V$OCT1.01 - Octamer-binding factor 1

V$OCT1.02 - Octamer-binding factor 1

V$OCT1.03 -

V$OCT1.04 - Octamer-binding factor 1

V$OCT1.05 - Octamer-binding factor 1

V$OCT1.06 - Octamer-binding factor 1

V$OCT1_01 - octamer factor 1

V$OCT1_02 - Oct related factors

V$OCT1_03 - Oct-1

V$OCT1_04 - Oct-1

V$OCT1_05 - octamer-binding factor 1

V$OCT1_06 - octamer-binding factor 1

V$OCT1_07 - octamer factor 1

V$OCT1_B - Oct-1: Octamer binding factor 1

V$OCT1_Q6 - octamer factor 1

V$OCT3_4_01 - Octamer binding protein

V$OCT_01 - Octamer binding site (OCT1/OCT2 consensus)

V$OCT_C - Octamer binding site

V$OCTB - OCT6 binding factors_astrocytes + glioblastoma cells

V$TST1.01 - POU-factor Tst-1/Oct-6

V$TST1_01 - POU-factor Tst-1/Oct-6

V$OCTP - OCT1 binding factor (POU-specific domain)

V$OCT1P.01 - Octamer-binding factor 1, POU-specific domain

V$OCT1P_01 - octamer-binding factor 1, POU-specific domain

V$P53F - p53 tumor suppr.-neg. regulat. of the tumor suppr. Rb

V$P53.01 - Tumor suppressor p53

V$P53.02 - Tumor suppressor p53 (5' half site)

V$P53.03 - Tumor suppressor p53 (3' half site)

V$P53_01 - tumor suppressor p53

V$P53_02 - p53

V$P53_03 - Tumor suppressor p53 (3' half site)

V$PARF - PAR/bZIP family

V$DBP.01 - Albumin D-box binding protein

V$DBP_01 - Albumin D-box binding protein

V$PAX1 - PAX-1 binding sites

V$PAX1.01 - Pax1 paired domain protein, expressed in the developing vertebral column of mouse embryos

V$PAX1_01 - Pax1 paired domain protein, expressed in the developing vertebral column of mouse embryos

V$PAX1_B - Pax1 binding sites

V$PAX2_01 - Pax-2

V$PAX2 - PAX-2 binding sites

V$PAX2.01 - Zebrafish PAX2 paired domain protein

V$PAX3 - PAX-3 binding sites

V$PAX3 - Pax-3 binding sites

V$PAX3.01 - Pax-3 paired domain protein, expressed in embryogenesis, mutations correlate to Waardenburg Syndrome

V$PAX3_01 - Pax-3 paired domain protein, expressed in embryogenesis, mutations correlate to Waardenburg Syndrome

V$PAX3_B - Pax-3 binding sites

V$PAX4 - Heterogeneous PAX-4 binding sites

V$PAX3_02 - Pax-3 paired domain protein

V$PAX4.01 - Pax-4 homeodomain binding site, together with PAX-6 involved in pancreatic development

V$PAX4_01 - Pax-4 binding sites

V$PAX4_02 - Pax-4 binding sites

V$PAX4_03 - Pax-4 binding sites

V$PAX4_04 - Pax-4

V$PAX5 - PAX-5/PAX-9 B-cell-specific activating protein

V$PAX5.01 - B-cell-specific activating protein

V$PAX5.02 - B-cell-specific activating protein

V$PAX5.03 - PAX5 paired domain protein

V$PAX5_01 - B-cell-specific activating protein

V$PAX5_02 - B-cell-specific activating protein

V$PAX9.01 - Zebrafish PAX9 binding sites

V$PAX9_01 - zebrafish PAX9 binding sites

V$PAX9_B - zebrafish PAX9 binding sites

V$PAX6 - PAX-4/PAX-6 paired domain binding sites

V$PAX4_PD.01 - PAX4 paired domain binding site

V$PAX4_PD_01 - PAX4 paired domain binding site

V$PAX6.01 - Pax-6 paired domain binding site

V$PAX6.02 - PAX6 paired domain and homeodomain are required for binding to this site

V$PAX6_01 - Pax-6

V$PAX8 - PAX-2/5/8 binding sites

V$PAX6_02 - PAX6 paired domain and homeodomain are required for binding to this site

V$PAX8.01 - PAX 2/5/8 binding site

V$PAX8_01 - PAX 2/5/8 binding site

V$PAX8_B - Pax-8

V$PBXC - PBX1 - MEIS1 complexes

V$PBX1_MEIS1.01 - Binding site for a Pbx1/Meis1 heterodimer

V$PBX1_MEIS1.02 - Binding site for a Pbx1/Meis1 heterodimer

V$PBX1_MEIS1.03 - Binding site for a Pbx1/Meis1 heterodimer

V$PBX1_MEIS1_01 - Binding site for a Pbx1/Meis1 heterodimer

V$PBX1_MEIS1_02 - Binding site for a Pbx1/Meis1 heterodimer

V$PBX1_MEIS1_03 - Binding site for a Pbx1/Meis1 heterodimer

V$PBXF - Homeo domain factor PBX-1

V$PBX1.01 - Homeo domain factor Pbx-1

V$PBX1_01 - pre-B-cell leukemia transcription factor 1

V$PBX1_02 - homeo domain factor Pbx-1

V$PCAT - Promoter CCAAT binding factors

V$ACAAT.01 - Avian C-type LTR CCAAT box

V$ACAAT_01 - Avian C-type LTR CCAAT box

V$ACAAT_B - Avian C-type CCAAT box

V$CAAT.01 - Cellular and viral CCAAT box

V$CAAT_01 - cellular and viral CCAAT box

V$PDX1 - Pancreatic and intestinal homeodomain transcr. factor

V$IPF1_Q4 - IPF1

V$ISL1.01 - Pancreatic and intestinal lim-homeodomain factor

V$ISL1_01 - Pancreatic and intestinal lim-homeodomain factor

V$PDX1.01 - Pdx1 (IDX1/IPF1) pancreatic and intestinal homeodomain TF

V$PDX1_01 - Pdx1 (IDX1/IPF1) pancreatic and intestinal homeodomain TF

V$PDX1_B - Pdx1 (IDX1/IPF1) pancreatic and intestinal homeodomain TF

V$PERO - PEROxisome proliferator-activated receptor

V$PPARA.01 - PPAR/RXR heterodimers

V$PPARA_01 - PPAR/RXR heterodimers

V$PPARG_02 - PPARG

V$PPARG_03 - PPAR

V$PPAR_RXR_01 - PPAR/RXR heterodimers

V$PPAR_RXR_02 - PPAR/RXR heterodimers

V$PIT1 - GHF-1 pituitary specific pou domain transcription factor

V$PIT1.01 - Pit1, GHF-1 pituitary specific pou domain transcription factor

V$PIT1_01 - Pit1, GHF-1 pituitary specific pou domain transcription factor

V$PIT1_B - Pit1, GHF-1 pituitary specific pou domain transcription factor

V$PLZF - C2H2 zinc finger protein PLZF

V$PLZF.01 - Promyelocytic leukemia zink finger (TF with nine Krueppel-like zink fingers)

V$PLZF_01 - Promyelocytic leukemia zink finger (TF with nine Krueppel-like zink fingers)

V$PXRF - Pregnane X receptor

V$PXRCAR.01 - Halfsite of PXR (pregnane X receptor)/RXR resp. CAR (constitutive androstane receptor)/RXR heterodimer binding site

V$PXRCAR_01 - Halfsite of PXR (pregnane X receptor)/RXR resp. CAR (constitutive androstane receptor)/RXR heterodimer binding site

V$RARF - Nuclear receptor for retinoic acid

V$RAR.01 - Retinoic acid receptor, member of nuclear receptors

V$RAR_01 - Retinoic acid receptor, member of nuclear receptors

V$RAR_02 - Retinoic acid receptor, member of nuclear receptors, DR5 site

V$RAR_B - Retinoic acid receptor, member of nuclear receptors

V$RTR.01 - Retinoid receptor-related testis-associated receptor (GCNF/RTR)

V$RTR_01 - Retinoid receptor-related testis-associated receptor (GCNF/RTR)

V$RBIT - Regulator of B-Cell IgH transcription

V$BRIGHT.01 - Bright, B cell regulator of IgH transcription

V$BRIGHT_01 - Bright, B cell regulator of IgH transcription

V$RBPF - RBPJ - kappa

V$RBPJK.01 - Mammalian transcriptional repressor RBP-Jkappa/CBF1

V$RBPJK.02 - Mammalian transcriptional repressor RBP-Jkappa/CBF1

V$RBPJK_01 - Mammalian transcriptional repressor RBP-Jkappa/CBF1

V$RBPJK_02 - Mammalian transcriptional repressor RBP-Jkappa/CBF1

V$RCAT - Retroviral CCAAT binding factors

V$CLTR_CAAT.01 - Mammalian C-type LTR CCAAT box

V$CLTR_CAAT_01 - Mammalian C-type LTR CCAAT box

V$REBV - Epstein-Barr virus transcription factor R

V$EBVR.01 - Epstein-Barr virus transcription factor R

V$EBVR_01 - Epstein-Barr virus transcription factor R

V$R_01 - Epstein-Barr virus transcription factor R

V$RORA - v-ERB and rar-related Orphan Receptor Alpha

V$ER_Q6 - estrogen receptor

V$NBRE.01 - Monomers of the nur subfamily of nuclear receptors (nur77, nurr1, nor-1)

V$NBRE_01 - Monomers of the nur subfamily of nuclear receptors (nur77, nurr1, nor-1)

V$RORA1.01 - RAR-related orphan receptor alpha1

V$RORA1_01 - RAR-related orphan receptor alpha1

V$RORA2.01 - RAR-related orphan receptor alpha2

V$RORA2_01 - RAR-related orphan receptor alpha2

V$T3R.01 - vErbA, viral homolog of thyroid hormone receptor alpha1

V$T3R_01 - viral homolog of thyroid hormone receptor alpha1

V$TR2_01 - Nuclear hormone receptor TR2, half site

V$TR4_01 - Nuclear hormone receptor TR4 homodimer binding site

V$RP58 - RP58 (ZFP238) zinc finger protein

V$RP58.01 - Zinc finger protein RP58 (ZNF238), associated preferentially with heterochromatin

V$RP58_01 - Zinc finger protein RP58 (ZNF238), associated preferentially with heterochromatin

V$RREB - Ras-responsive element binding protein

V$RREB1.01 - Ras-responsive element binding protein 1

V$RREB1_01 - Ras-responsive element binding protein 1

V$RXRF - RXR heterodimer binding sites

V$FXRE.01 - Farnesoid X - activated receptor (RXR/FXR dimer)

V$FXRE_01 - Farnesoid X - activated receptor (RXR/FXR dimer)

V$LXRE.01 - Nuclear receptor involved in the regulation lipid homeostasis

V$LXRE_01 - Nuclear receptor involved in the regulation lipid homeostasis

V$VDR_RXR.01 - VDR/RXR Vitamin D receptor RXR heterodimer site

V$VDR_RXR.02 - VDR/RXR Vitamin D receptor RXR heterodimer site

V$VDR_RXR_01 - VDR/RXR heterodimer site

V$VDR_RXR_02 - VDR/RXR heterodimer site

V$VDR_RXR_03 - Bipartite binding site of VDR/RXR heterodimers without a spacer between directly repeated motifs

V$VDR_RXR_04 - Bipartite binding site of VDR/RXR heterodimers: 2 spacer nucleotides between the two directly repeated motifs

V$VDR_RXR_05 - Bipartite binding site of VDR/RXR heterodimers: 3 spacer nucleotides between the two directly repeated motifs

V$VDR_RXR_06 - Bipartite binding site of VDR/RXR heterodimers: 4 spacer nucleotides between the two directly repeated motifs

V$SATB - Special AT-rich sequence binding protein

V$SATB1.01 - Special AT-rich sequence-binding protein 1, predominantly expressed in thymocytes, binds to matrix attachment regions (MARs)

V$SATB1_01 - Special AT-rich sequence-binding protein 1, predominantly expressed in thymocytes, binds to matrix attachment regions (MARs)

V$SF1F - Vertebrate steroidogenic factor

V$FTF.01 - Alpha (1)-fetoprotein transcription factor (FTF), liver receptor homologue-1 (LHR-1)

V$FTF_01 - Alpha (1)-fetoprotein transcription factor (FTF), liver receptor homologue-1 (LHR-1)

V$SF1.01 - SF1 steroidogenic factor 1

V$SF1_01 - SF1 steroidogenic factor 1

V$SIXF - Sine oculis (SIX) homeodomain factors

V$SIX3_01 - SIX3 / SIXdomain (SD) and Homeodomain (HD) transcription factor

V$SMAD - Vertebrate SMAD family of transcription factors

V$SMAD3.01 - Smad3 transcription factor involved in TGF-beta signaling

V$SMAD3_01 - Smad3 transcription factor involved in TGF-beta signaling

V$SMAD3_B - Smad3 transcription factor involved in TGF-beta signaling

V$SMAD4.01 - Smad4 transcription factor involved in TGF-beta signaling

V$SMAD4_01 - Smad4 transcription factor involved in TGF-beta signaling

V$SMAD_01 - Vertebrate SMAD family of transcription factors

V$SORY - SOx/sRY-sex/testis determinig and related HMG box factors

V$HBP1_01 - HMG box-containing protein 1

V$HMGA_01 - HMGA family of architectural transcription factors (HMGA1, HMGA2)

V$HMGIY.01 - HMGI(Y) high-mobility-group protein I (Y), architectural transcription factor organizing the framework of a nuclear protein-DNA transcriptional complex

V$HMGIY_01 - HMGI(Y) high-mobility-group protein I (Y), architectural transcription factor organizing the framework of a nuclear protein-DNA transcriptional complex

V$SOX5.01 - Sox-5

V$SOX5_01 - Sox-5

V$SOX9.01 - SOX (SRY-related HMG box)

V$SOX9_01 - SOX (SRY-related HMG box)

V$SOX9_02 - SOX/SRY-sex/testis determinig and related HMG box factors

V$SOX9_B1 - SOX (SRY-related HMG box)

V$SRY.01 - Sex-determining region Y gene product

V$SRY_01 - sex-determining region Y gene product

V$SRY_02 - sex-determining region Y gene product

V$SP1F - GC-Box factors_SP1/GC

V$BTEB3.01 - Basic transcription element (BTE) binding protein, BTEB3, FKLF-2

V$BTEB3_01 - Basic transcription element (BTE) binding protein, BTEB3, FKLF-2

V$GC.01 - GC box elements

V$GC_01 - GC box elements

V$SP1.01 - Stimulating protein 1 SP1, ubiquitous zinc finger transcription factor

V$SP1_01 - Sp1

V$SP1_02 - Stimulating protein 1, ubiquitous zinc finger transcription factor

V$SP1_Q6 - stimulating protein 1

V$SP2_01 - Sp2, member of the Sp/XKLF transcription factors with three C2H2 zinc fingers in a conserved carboxyl-terminal domain

V$TIEG_01 - TGFbeta-inducible early gene (TIEG) / Early growth response gene alpha (EGRalpha)

V$SRFF - Serum response element binding factor

V$SRF.01 - Serum response factor

V$SRF.02 - Serum response factor

V$SRF.03 - Serum responsive factor

V$SRF_01 - serum response factor

V$SRF_02 - serum response factor

V$SRF_03 - serum responsive factor

V$SRF_C - Serum responsive factor

V$SRF_Q6 - serum response factor

V$STAT - Signal transducer and activator of transcription

V$STAT.01 - Signal transducers and activators of transcription

V$STAT1.01 - Signal transducer and activator of transcription 1

V$STAT1_01 - signal transducer and activator of transcription 1

V$STAT3.01 - Signal transducer and activator of transcription 3

V$STAT3_01 - signal transducer and activator of transcription 3

V$STAT5.01 - STAT5: signal transducer and activator of transcription 5

V$STAT5A_01 - Signal transducer and activator of transcription 5

V$STAT5A_02 - STAT5: signal transducer and activator of transcription 5

V$STAT5B_01 - STAT5: signal transducer and activator of transcription 5

V$STAT5_01 - STAT5: signal transducer and activator of transcription 5

V$STAT6.01 - STAT6: signal transducer and activator of transcription 6

V$STAT6_01 - STAT6: signal transducer and activator of transcription 6

V$STAT_01 - signal transducers and activators of transcription

V$TALE - TALE homeodomain class recognizing TG motifs

V$TGIF.01 - TG-interacting factor belonging to TALE class of homeodomain factors

V$TGIF_01 - TALE Homeodomain class recognizing TG motives

V$TBPF - Tata-binding protein factor

V$ATATA.01 - Avian C-type LTR TATA box

V$ATATA_01 - Avian C-type LTR TATA box

V$ATATA_B - Avian C-type TATA box

V$LTATA_01 - Lentivirus LTR TATA box

V$MTATA.01 - Muscle TATA box

V$MTATA_01 - Muscle TATA box

V$MTATA_B - Muscle TATA box

V$TATA.01 - cellular and viral TATA box elements

V$TATA.02 - Mammalian C-type LTR TATA box

V$TATA_01 - cellular and viral TATA box elements

V$TATA_02 - Mammalian C-type LTR TATA box

V$TATA_C - Retroviral TATA box

V$TCFF - TCF11 transcription factor

V$TCF11.01 - TCF11/KCR-F1/Nrf1 homodimers

V$TCF11_01 - TCF11/KCR-F1/Nrf1 homodimers

V$TEAF - TEA/ATTS DNA binding domain factors

V$TEAD_01 - TEA domain-containing factors, transcriptional enhancer factors 1,3,4,5

V$TEF1.01 - TEF-1 related muscle factor

V$TEF1_01 - TEF-1 related muscle factor

V$TEF_01 - Thyrotrophic embryonic factor

V$TEF_HLF_01 - Thyrotrophic embryonic factor / hepatic leukemia factor

V$TTFF - Thyroid transcription factor-1

V$TTF1.01 - Thyroid transcription factor-1 (TTF1) binding site

V$TTF1_01 - Thyroid transcription factor-1 (TTF1) binding site

V$VBPF - Chicken vitellogenin gene binding protein factor

V$VBP.01 - PAR-type chicken vitellogenin promoter-binding protein

V$VBP_01 - PAR-type chicken vitellogenin promoter-binding protein

V$VMYB - AMV-viral myb oncogene

V$VMYB.01 - v-Myb

V$VMYB.02 - v-Myb

V$VMYB.04 - v-Myb, AMV v-myb

V$VMYB.05 - v-Myb, variant of AMV v-myb

V$VMYB_01 - v-Myb

V$VMYB_02 - v-Myb

V$WHZF - Winged Helix and ZF5 binding sites

V$WHN.01 - Winged helix protein, involved in hair keratinization and thymus epithelium differentiation

V$WHN_01 - winged helix protein, involved in hair keratinization and thymus epithelium differentiation

V$WHN_B - winged helix

V$XBBF - X-box binding factors

V$MIF1.01 - MIBP-1 / RFX1 complex

V$MIF1_01 - MIBP-1 / RFX1 complex

V$RFX1.01 - X-box binding protein RFX1

V$RFX1.02 - X-box binding protein RFX1

V$RFX1_01 - X-box binding protein RFX1

V$RFX1_02 - X-box binding protein RFX1

V$XBOX_01 - X-box binding factors

V$XSEC - Xenopus seleno cystein t-RNA activiating factor

V$STAF.01 - Se-Cys tRNA gene transcription activating factor

V$STAF.02 - Se-Cys tRNA gene transcription activating factor

V$STAF_01 - Se-Cys tRNA gene transcription activating factor

V$STAF_02 - Se-Cys tRNA gene transcription activating factor

V$YY1F - Activator/repressor binding to transcription initiation site

V$YY1.01 - Yin and Yang 1

V$YY1_01 - YY1

V$YY1_02 - Yin and Yang 1

V$ZBPF - Zinc binding protein factor

V$KLF6_01 - Zinc binding protein factors

V$ZBP89.01 - Zinc finger transcription factor ZBP-89

V$ZBP89_01 - Zinc finger transcription factor ZBP-89

V$ZF9.01 - Core promoter-binding protein (CPBP) with 3 Krueppel-type zinc fingers

V$ZF9_01 - Core promoter-binding protein (CPBP) with 3 Krueppel-type zinc fingers

V$ZNF202.01 - Transcriptional repressor, binds to elements found predominantly in genes that participate in lipid metabolism

V$ZNF202_01 - Transcriptional repressor, binds to elements found predominantly in genes that participate in lipid metabolism

V$ZNF219_01 - Kruppel-like zinc finger protein 219

V$ZF5F - ZF5 POZ domain zinc finger

V$ZF5.01 - Zinc finger / POZ domain transcription factor

V$ZF5_01 - Zinc finger / POZ domain transcription factor

V$ZFIA - Zinc finger with interaction domain factors

V$ZID.01 - Zinc finger with interaction domain

V$ZID_01 - zinc finger with interaction domain

ConCisE Scanner

Conserved Cis-Element Scanner: Genome-wide ortholog conserved Cis-element module search

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v3.1.2 Developed by the Division of BioMedical Informatics Copyright © 2002-2006 Cincinnati Children's Hospital Medical Center Terms of Use

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Developed by the Division of BioMedical Informatics

Copyright © 2002-2006 Cincinnati Children's Hospital Medical Center

Terms of Use